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Andrew Maynard

Synthetic biology, ethics and the hacker culture

Read Thomas L. Friedman’s “The World is Flat” or Neal Stephenson’s “Cryptonomicon”, and you get a glimpse into how the hacker culture that emerged at the tail end of the twentieth century revolutionized the digital world.  Will a confluence of emerging technologies—including information tech, biotech, and nanotech—lead to a similar revolution in the biological world?

Behind every computer screen is a complexity of software and hardware that together create a virtual world in which many of us spend more time living out our lives than is probably healthy—whether crunching numbers, playing games or churning out our latest blog.  This world is built in part (some would say a large part) on the work of technically savvy individuals—hackers—who have learned the art of manipulating the fundamental building blocks of the digital world.  

According to that fount of all knowledge Wikipedia, a “computer hacker is a person who enjoys designing software and building programs with a sense for aesthetics and playful cleverness.”  A big attraction of hacking is the ability to change “reality” (albeit a digital reality) by manipulating the software (and hardware in the broadest interpretation of "hacker") that defines it. And the factors that make this possible? Easy access to knowledge and tools, and the development of global grassroots networks for information sharing.

But here’s a question: what are the chances of a biology-based hacker culture arising; enticed by the lure of tinkering with biological codes that define living systems, rather than digital codes that govern digital systems?  The answer is that it is already here.  The “biohacking” culture is alive and kicking, and already pushing the boundaries of what is possible and acceptable.

Reading through a just-released report on the social and ethical challenges of synthetic biology commissioned by the U.K. Biotechnology and Biological Sciences Research Council (Synthetic Biology.  Social and Ethical Challenges.  PDF, 740 KB), I was particularly intrigued by a short section on what has been termed “garage biology.”  (For a succinct overview of the report , I would recommend Richard Jones’ recent blog entry at Soft Machines.)  On the subject of garage biology, authors Andrew Balmer and Paul Martin of the Institute for Science and Society at the University of Nottingham had this to say:

“As DNA sequencing becomes cheaper and quicker and second hand equipment becomes available on eBay the power to create synthetic sequences may be dispersed to many individuals and groups.  Biohackers have also become known by the portmanteau ‘biopunk’ (biotech punk), that has its origins as a science fiction genre.  The most recent, and significant addition to this movement has been the online publication of a ‘Primer for Synthetic Biology’, a manual, written in simple, non-technical language, for those wishing to engage themselves in some bio hacking.”

With my interest piqued, I went on-line to check out the "biopunk" community.  A quick search brought up this recent comment from a teenager on the biopunk.org website:

“A few weeks ago I had somebody in school complaining about her eating disorder, Ceiliacs disease or something, and how she can't eaten certain foods because of it. She has mentioned this before, and frankly I was tired of it, so I spent just *20* minutes on the internet during my lunch period and found a cure hidden in the patent database, and then told her how to use http://e-oligos.com/ and then http://biohack.sf.net/ and http://openwetware.org/ to get the materials she needs from http://labx.com/ to implement the solution in some gastrointestinal bacteria and cure it herself. Problem freakin' solved.” [http://www.biopunk.org/on-the-state-of-biodiy-biopunk-culture-t36.html]

I have no idea whether synthetic biology is as accessible to the masses as this comment would imply (I suspect not).  But clearly there is a growing culture of people interested in playing with genetic software and hardware in much the same way as conventional hackers play with computer software and hardware.  And this is being spurred on by increasingly easy access to tools and knowledge within a growing grassroots community.  

Additional parallels between digital and biological hacking abound.  For instance, one of the drivers behind the development of the digital world most of us now inhabit was the open source movement, providing open access to computer code on the understanding that hackers shared any improvements made to the code with the rest of the world.  Similar movements are growing up around synthetic biology, with the significant difference being that the “code” is now biological.  A good example is the BioBricks Foundation that is developing an open source registry of standard biological parts that can be used to “program living organisms in the same way a computer scientist can program a computer.”

While only time will tell whether the biopunk movement will have the same impact on synbio as the hacker culture had on the digital world (and there are plenty of skeptics out there who are doubtful), the idea of “hacking biology” appeals to plenty of people.  Especially where it brings within their grasp tools that enable engineering-based concepts to be applied to biological systems.  Drew Endy—a leading proponent of synthetic biology—had this to say in a recent interview:

“Programming DNA is more cool, it's more appealing, it's more powerful than silicon. You have an actual living, reproducing machine; it's nanotechnology that works. It's not some Drexlarian (Eric Drexler) fantasy. And we get to program it. And it's actually a pretty cheap technology. You don't need a FAB Lab like you need for silicon wafers. You grow some stuff up in sugar water with a little bit of nutrients. My read on the world is that there is tremendous pressure that's just started to be revealed around what heretofore has been extraordinarily limited access to biotechnology.” [Edge, issue 237, February 19 2008]


While the debate surrounding the social and ethical development and use of synthetic biology tends to focus on issues such as bioterrorism, uncontrolled releases, global justice and the creation of “artificial life,” it is quite possible that a successful biopunk movement will change the context within which this debate is conducted. How do you establish a framework for socially and ethically responsible development when the person you need to reach is an adolescent teenager constructing new biological code in their basement?  

This is a major challenge to the development of safe and societally accepted synthetic biology.  Biological hacking may never develop on the scale of computer hacking —“life” might shatter our hubris by turning out to be more complex than anyone imagined.  But I do not think we can afford to be complacent here.  The four recommendations made in the BBSRC report will definitely help pave the way towards socially and ethically responsible synthetic biology: recognizing the importance of maintaining public legitimacy and support; ensuring the scientific community engage with society on the impacts of their work; pursuing partnerships with civil society groups, social scientists and ethicists; and putting in place a robust governance framework before synthetic biology applications are realized.  However, I suspect that these are just the first steps in a long process to ensure society as a whole takes responsibility for developing and using an increasing level of control over the basic building blocks of life wisely.

As a final thought, when a hacker causes the digital reality in their computer to malfunction through tinkering, they can simply reboot and start again.  It might not be so simple when hacking life itself.  This may be a flawed analogy, but it is probably something the new socioethics of synbio should address if serious mis-steps are to be avoided.

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Bryan Bishop said:

Hey,

So you ask how to go about the development of that framework so that some angsty teens don't go about screwing things up royally. The problem with this sort of thinking is that, what if you are wrong? What if your ethical framework doesn't work out in the end and bioterrorists do emerge and so on? That's not good at all. That's not something that regulatory policy is going to stop, that's something that's as bad as a disease. Think about the problems that we have with the Center for Disease Control and Prevention: they can hardly control the common cold, much less the flu, much less anything with more letters to its name.

That's not the way to do it. That's the way to fail. Instead of hoping that we can encompass everyone into a regulatory framework (which could still be developed anyway, sure), we should be focusing on ways to make sure that we aren't, uh, killed. This is going to require change. Does anybody remember what was happening back when we were building nuclear bunkers? I don't. But from what I can tell, and from what I've read and seen, people were beginning to build solutions against nuclear fallout (radiation). Yes, politics still went on and people were trying to make sure the superpowers at large wouldn't blow everything up -- thus developed the Cold War -- but really, people got serious and realized that politics might fail and so they took action. They built bunkers.

Same thing here. The solution isn't exactly bunkers. The solution is (partial) isolation, the solution is medical science training, the solution is epidemiology and the tracking of diseases, of training the population at large to be able to take responsibility for themselves. The solution is to implement in vitro meat tanks as much as possible, to implement space pods and moderately isolated environments, amazing air purification systems, etc. etc. High-class facilities already implement these sorts of systems, like in si fabs, BSL5 labs, probably a good number of government facilities. But there's no reason that we can't start taking this sort of responsibility into our own hands. A good first step is the acquisition of the ability to maintain 'environmental integrity', such as monitoring for biological agents, infections, etc., how to have enough energy reserves when the current (thawed) meat supply becomes infected and needs to be trashed (autoclaved), etc. etc. One of the minor projects that we can start with is face mask technology, seeing where that leads us. There's probably a good amount of information on this out on the internet due to the proliferation of chemical warfare (so, there's a useful byproduct of all that fighting, right?).

Anyway, an ultimate solution that I hope others will join up with is the idea of spacepods. The current International Space Station is an illustration of this. Bigelow's expandable space pod is also an example of this. The idea is to have a pod that is environmentally isolated and can be completely managed, so that *you* control what you breath, what you eat, who you allow on board, so that *you* can implement policies and make sure you're not going to kill yourself.

http://openvirgle.net/

Another interesting option is to wonder, hey, what if we let our bodies die? Why not focus on making backup systems? There's no reason why our walking bodies have to be the only ones. Yes, we can clone DNA. No, we cannot clone brains. But that's no reason why we shouldn't be trying to implement brain backup technology. That's another project that I like to focus on. I'm not talking about Mind Upload ( http://minduploading.org/research.html is an example of the seeds of this ). I'm just talking about the concept of storing information that could be used to reconstruct a similar brain. There's going to be loss, but frankly I find it acceptable in face of the alternative (i.e., total death).

I hope this helps. I'm the guy you quoted.

- Bryan

June 13, 2008 22:58
 

andrew.maynard@physics.org said:

Hi Bryan, and welcome to the blog.

I think whatever the solutions are here, they are going to have to be inventive--the same old same old just won't work.  And more than ever, they are going to have to be arrived at by communities working together.  Not sure I'm convinced about "spacepods"--if society gets so out of hand that isolation is the only solution, I think we might have missed our way.  But at this stage, the more creative and innovative the thinking the better.

Brain backups--not in my lifetime I suspect, but ever read Iain M. Banks' "Culture" novels?  the idea's alive and kicking in the Space Opera community!

Cheers,

Andrew

June 14, 2008 01:05
 

Bryan Bishop said:

Hey Andrew, thanks for the reply. I was coming back to drop a few comments regarding a line that a friend highlighted for me, but now that I see you have replied, even better. So, first, I'm not talking about 'isolating society'. Nah, that's not needed. Rather, people build houses to protect themselves from the elements, and the same goes for protecting from biology, from the spread of diseases and such. It's the reason why we don't get our water from the river, and we instead do more industrialized processes [and I'd rather have it more distributed / more personal so that we can do it on our own and not be reliant on a giant system that may or may not break, that people may or may not know how to fix, and such].

Re: Ian M. Banks. Although I have his books sitting on my shelf to the side, no. That's on my "to read" list. :) Somebody pointed out to me that my comment on brain backups sounds too much like mind uploading. So I just want to point out that there are tons of protocols out there on the internet for neural tissue cultures, and that one doesn't have to be running around with their brain being their ownly implementation or partial implementation -- we can do better than this, and we can make sure that just in case something *does* go bump, we can still reliably be around to talk about it and solve whatever serious problems we might see come along.

So, I actually came back to comment on this line of yours:

"While the debate surrounding the social and ethical development and use of synthetic biology tends to focus on issues such as bioterrorism, uncontrolled releases, global justice and the creation of ?artificial life,? it is quite possible that a successful biopunk movement will change the context within which this debate is conducted. "

This sounds a terribly lot like the social organization schemes that are suggested by F/OSS projects like debian, the collaborative operating system project that is worth an estimated $10 billion USD alone -- not including the hundreds of thousands of users and all of the wonderful support that they receive. One of the reasons I like to mention debian is because it's exactly the social development and ethical development that I suspect that you are mentioning. It's the collaborative framework that takes advantage of the technology that we find ourself using, so that we can build the solutions to the various problems and issues we see before us. I have some (poor) notes on this on my site, if you're interested.

http://heybryan.org/exp.html with links to debian.org, reprap.org, gnu.org, and other related projects. In particular, a few days ago I put up a youtube video on how to do this collaborative development on a biotech toolkit project. How close to the mark is this? It's not centralized, it's not "owned" by anybody, anybody can download the git repository content and update it, add new things, fix stuff, delete (bad) stuff, etc. I'd say that this would change the context of the debate towards proactive involvement, rather than the trends in debates that you point out (per the quote above).

- Bryan

June 14, 2008 02:16
 

Chris Seidel said:

Interesting comment. I think the hacker culture is fueling the attitude that "I don't care how complex this system is, I can mess with it", and giving - especially younger people, a sense of entitlement that the world exists to be manipulated, and we are the manipulators. Wet biology may have been somewhat off-limits in the past because information was limiting. However, in the last 10 years alone, with the explosion of information from genomic projects, molecular biology has become as much an information science as a wet science - thus allowing the creation of things like the standard registry. I have noticed however, that in a lot of synthetic biology literature, one thing left out is mention of the immense complexity and difficulty of doing work with living systems. Perhaps Bryan's comment on Celiacs disease is a prime example. If it were really that easy for someone to cure their own disease by reading a patent on ordering some oligos - the problem would be solved. On the contrary, it still takes tens of thousands of dollars (at least), and people with graduate degrees to do something as simple as purifying a (novel) recombinant protein from yeast or e. coli.

June 15, 2008 06:57
 

andrew.maynard@physics.org said:

Chris,

I find it intriguing that the concept of nature as a designed system that we can re-design is really pushing at least some parts of the synbio community - leading to this "can do" attitude.  Of course the biggest hurdle to this approach is that evolutionary systems don't necessarily follow the same clean-cut rules as conventional engineering, and are inherently more intertwined.

A poor analogy that really cannot be pushed too far is to consider filling a complex void - a hole in the ground - with a perfectly complementary plug.  The conventional engineering approach would require a system more complex than the solution to create a plug that was engineered to fit every contour of the void.  In contrast, the "natural" approach would be a complex solution arising from a simple rule set - introduce a liquid where the molecules adhere to the rules "follow gravity" and "stick to your nearest neighbours - but not too hard", and you fill every complex contour of the void perfectly.  

This "complexity arising from simple rules" trend in biology and other areas of science leads to systems that cannot simply be reverse-engineered - DNA is a great example I suspect.  But the really interesting question here is whether a grassroots community that believes that it can hack biology will end up finding complex solutions through simple means, just by virtue of the evolutionary nature of a movement like this.

Andrew

June 15, 2008 13:27
 

andrew.maynard@physics.org said:

Bryan,

Thanks for the links to the various projects.  I think that social organization schemes have tremendous potential for communicating with and engaging broad communities, although they have to be accessible and inclusive if they are to represent broad swathes of society.

The git repository looks like a great initiative, but is geared towards a specific community.  I would love to see broader initiatives that less technically savvy people can participate in.

Cheers,

Andrew

June 15, 2008 13:32

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